replica 1 | Gromacs 60 ns MD of SARS-CoV-2 spike trimer, All Atom model (60 ns) | MDRepoGromacs 60 ns MD of SARS-CoV-2 spike trimer, All Atom model (60 ns)
Openreplica 1NPT
Loading structure.
Parameters
- Length
- 57.84 ns@ 2 fs = 28,920,000 steps
- Frames
- 7231 frame every 80 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
- Temperature
300 KForce fieldCHARMM27water model TIP3P Box19.923 x 19.923 x 19.923 nmTriclinic · 7,908.19 nm³ Composition- Total system52,329 atoms · 3,393 residues
- Protein52,329 atoms · 3,393 residues
- Nucleic acids0 atoms · 0 residues
- Lipids0 atoms · 0 residues
- Carbohydrates0 atoms · 0 residues
- Solvent0 atoms · 0 residues
Counter-ions- 0Cations (+)
- 0Anions (-)
- 0Total ions