replica 1 | All-atom molecular dynamics simulations of SARS-CoV-2 envelope protein E in the monomeric form, C1 mix | MDRepoAll-atom molecular dynamics simulations of SARS-CoV-2 envelope protein E in the monomeric form, C1 mix
OpenAlexander Kuzmin;Philipp Orekhov;Roman Astashkin;Valentin Gordeliy;Ivan Gushchin;
replica 1NPT
Loading structure.
Parameters
- Length
- 15,003 ns
- Frames
- 5,0011 frame every 3,000 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
Temperature310 KForce fieldCHARMM36mwater model TIP3P Box0.000 x 0.000 x 0.000 nm0.00 nm³ Composition- Total system51,495 atoms · 475 residues
- Protein1,215 atoms · 75 residues
- Nucleic acids0 atoms · 0 residues
- Lipids50,280 atoms · 400 residues
- Carbohydrates0 atoms · 0 residues
- Solvent0 atoms · 0 residues
Counter-ions- 0Cations (+)
- 0Anions (-)
- 0Total ions