replica 1 | MD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; cholesterol; closed | MDRepoMD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; cholesterol; closed
Openreplica 1NPT
Loading structure.
Parameters
- Length
- 200.1 ns
- Frames
- 2,0011 frame every 100 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
Force fieldAmber ff99SB-ILDNwater model TIP3P Box17.477 x 20.418 x 16.965 nm6,053.90 nm³ Composition- Total system51,777 atoms · 3,348 residues
- Protein51,555 atoms · 3,345 residues
- Nucleic acids0 atoms · 0 residues
- Lipids222 atoms · 3 residues
- Carbohydrates0 atoms · 0 residues
- Solvent0 atoms · 0 residues
Counter-ions- 0Cations (+)
- 0Anions (-)
- 0Total ions