replica 1 | MD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; dexamethasone; closed | MDRepoMD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; dexamethasone; closed
Openreplica 1NPT
Loading structure.
Parameters
- Length
- 200.1 ns
- Frames
- 2,0011 frame every 100 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
Force fieldAmber ff99SB-ILDNwater model TIP3P Box17.463 x 20.412 x 17.009 nm6,063.08 nm³ Composition- Total system51,726 atoms
- Protein51,555 atoms