replica 2 | MD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; apo; open | MDRepoMD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; apo; open
Openreplica 2NPT
Loading structure.
Parameters
- Length
- 200.1 ns
- Frames
- 2,0011 frame every 100 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
Temperature310 KForce fieldAmber ff99SB-ILDNwater model TIP3P Box18.011 x 22.534 x 17.779 nm7,215.66 nm³ Composition- Total system51,715 atoms · 3,355 residues
- Protein51,715 atoms · 3,355 residues
- Nucleic acids0 atoms · 0 residues
- Lipids0 atoms · 0 residues
- Carbohydrates0 atoms · 0 residues
- Solvent0 atoms · 0 residues
Counter-ions- 0Cations (+)
- 0Anions (-)
- 0Total ions