replica 1 | MD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; cholesterol; open | MDRepoMD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; cholesterol; open
Openreplica 1NPT
Loading structure.
Parameters
- Length
- 200.1 ns
- Frames
- 2,0011 frame every 100 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
Force fieldAmber ff99SB-ILDNwater model TIP3P Box17.923 x 22.171 x 17.339 nm6,890.09 nm³ Composition- Total system51,938 atoms
- Protein51,716 atoms