replica 3 | MD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; dexamethasone; open | MDRepoMD simulations of trimeric SARS-Cov2 spike protein ectodomain in explicit solvent; dexamethasone; open
Openreplica 3NPT
Loading structure.
Parameters
- Length
- 200.1 ns
- Frames
- 2,0011 frame every 100 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
Force fieldAmber ff99SB-ILDNwater model TIP3P Box18.019 x 22.202 x 17.398 nm6,960.09 nm³ Composition- Total system51,886 atoms
- Protein51,715 atoms