Folding@home molecular dynamics simulations of Diamond Light Source / XChem X-ray structures of small molecule inhibitors of the SARS-CoV-2 main protease from the COVID Moonshot; project 13433, run 353

Open

John D. Chodera;

MD-A00221

Created: 12 Jul 2023
License: This trajectory dataset is released under a Creative Commons Attribution 4.0 International Public License (opens in a new tab)

clone 2NPT

4,629 atomsFull system

Loading structure.

Length: 960 ns
Frames: 9601 frame every 1,000 ps
Ensemble: NPTconstant number of particles, pressure and temperature
Temperature: 300 K
Force field: Amber ff14SB, OpenFF 1.3.0water model TIP3P
Atoms: 4,629
Box: 8.135 x 8.135 x 8.135 nm538.39 nm³
Composition: Total system4,629 atoms · 300 residues
Protein4,591 atoms · 299 residues
Nucleic acids0 atoms · 0 residues
Lipids0 atoms · 0 residues
Carbohydrates0 atoms · 0 residues
Solvent0 atoms · 0 residues
Counter-ions: 0Cations (+)
0Anions (-)
0Total ions