Folding@home molecular dynamics simulations of Diamond Light Source / XChem X-ray structures of small molecule inhibitors of the SARS-CoV-2 main protease from the COVID Moonshot; project 13436, run 296
OpenJohn D. Chodera;
MD-A002H9
clone 3NPT
Trajectory
9,338 atomsFull system
- Length
- 1,000 ns
- Frames
- 1,000 / 1,000 ps
- Temperature
- 300 K
Loading structure.
Analysis
Parameters
- Length
- 1,000 ns
- Frames
- 1,0001 frame every 1,000 ps
- Ensemble
- NPTconstant number of particles, pressure and temperature
- Temperature
- 300 K
- Force field
- Amber ff14SB, OpenFF 1.3.0water model TIP3P
- Atoms
- 9,338
- Box
- 9.366 x 9.366 x 9.366 nm821.71 nm³
- Composition
- Total system9,338 atoms · 609 residues
- Protein9,294 atoms · 608 residues
- Nucleic acids0 atoms · 0 residues
- Lipids0 atoms · 0 residues
- Carbohydrates44 atoms · 1 residues
- Solvent0 atoms · 0 residues
- Counter-ions
- 0Cations (+)
- 0Anions (-)
- 0Total ions