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Structure preview of Dynarepo 3HI6

Dynarepo 3HI6

Open

Omid Mokhtari;Hamed Khakzad;Yasaman Karami;

MD-A003KZ
Created
23 Jul 2025
License
Apache License 2.0 (opens in a new tab)
  • Overview
  • Experiments 3
  • People & affiliations 3

Runs

3
  • 1replica 1500.1 nsNPT
  • 2replica 2500.1 nsNPT
  • 3replica 3500.1 nsNPT

replica 2NPT

Trajectory

2,893 atomsFull system

Length
500.1 ns @ 2 fs
Frames
5,001 / 100 ps
Temperature
310 K
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Analysis

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Parameters

Length
500.1 ns@ 2 fs = 250,050,000 steps
Frames
5,0011 frame every 100 ps
Ensemble
NPTconstant number of particles, pressure and temperature
Temperature
310 K
Force field
CHARMM36mwater model TIP3P
Atoms
2,893
Box
7.718 x 7.718 x 5.430 nmDodecahedron · 323.43 nm³
Composition
  • Total system2,893 atoms · 180 residues
  • Protein2,893 atoms · 180 residues
  • Lipids0 atoms · 0 residues
  • Carbohydrates0 atoms · 0 residues
  • Solvent0 atoms · 0 residues
Counter-ions
  • 0Cations (+)
  • 0Anions (-)
  • 0Total ions