MDRepo
/
CommunitiesMy depositions
New Deposition
Log in
MDRepoNeed help? e-INFRA CZ helpdesk
Structure preview of Dynarepo 4K9E

Dynarepo 4K9E

Open

Omid Mokhtari;Hamed Khakzad;Yasaman Karami;

MD-A003LI
Created
23 Jul 2025
License
Apache License 2.0 (opens in a new tab)
  • Overview
  • Experiments 3
  • People & affiliations 3

Runs

3
  • 1replica 1500.1 nsNPT
  • 2replica 2480.2 nsNPT
  • 3replica 3500.1 nsNPT

replica 2NPT

Trajectory

3,087 atomsFull system

Length
480.2 ns @ 2 fs
Frames
4,802 / 100 ps
Temperature
310 K
Download trajectory

Loading structure.

Analysis

Download

Parameters

Length
480.2 ns@ 2 fs = 240,100,000 steps
Frames
4,8021 frame every 100 ps
Ensemble
NPTconstant number of particles, pressure and temperature
Temperature
310 K
Force field
CHARMM36mwater model TIP3P
Atoms
3,087
Box
10.867 x 10.867 x 7.671 nmDodecahedron · 905.87 nm³
Composition
  • Total system3,087 atoms · 199 residues
  • Protein3,087 atoms · 199 residues
  • Lipids0 atoms · 0 residues
  • Carbohydrates0 atoms · 0 residues
  • Solvent0 atoms · 0 residues
Counter-ions
  • 0Cations (+)
  • 0Anions (-)
  • 0Total ions