Dynarepo 7KF1

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Omid Mokhtari;Hamed Khakzad;Yasaman Karami;

MD-A003N4

Description

Antigen from SAbDab, Classical MD simulations, 3 replicates of 500 ns

Starting structure: 7KF1PDB 7KF1(opens in a new tab)
Force field: CHARMM36mTIP3P
Engine: GROMACS 2024.2
Method: Classical MD
Ensemble: NPT
Temperature: 310 K
Timestep: 2 fs
Composition: Molecules of interest
ProteinProtein · 1 chain1,508 atoms95 residues
Total1,508 atoms95 residues
Box dimensions: Dodecahedron
a8.47nm
b8.47nm
c6.006nm

1

Sequence 1Protein · 95 residues

EVVKFMDVYQ RSYCHPIETL VDIFQEYPDE IEYIFKPSCV PLMRCGGCCN DEGLECVPTE ESNITMQIMR IKPHQGQHIG EMSFLQHNKC ECRPK

3

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DynaRepo Acknowledgements