MDBind 3gv6

Open

Pierre-yves Libouban;Pascal Bonnet;Samia Aci-Sèche;

MD-A0060H

Created: 16 Feb 2026
License: This trajectory dataset is released under a Creative Commons Attribution 4.0 International Public License (opens in a new tab)

Description

10 ns simulation of 3gv6 pdb structure from MDBind dataset, a dynamic view of the PDBBind database

Starting structure: 3GV6PDB 3GV6(opens in a new tab)
Force field: Amber ff14SB, GAFFTIP3P
Engine: Amber 20
Method: Classical MD
Timestep: 2 fs
Frames: 500
Composition: Molecules of interest
ProteinProtein · 1 chain982 atoms56 residues
OtherOther110 atoms
Total1,092 atoms57 residues
Box dimensions: a5.382nm
b5.514nm
c4.88nm

Sequence 1Protein · 56 residues

ERVFAAESII KRRIRKGRIE YLVKWKGWAI KYSTWEPEEN ILDSRLIAAF EQKERE

21 files · 15.3 MB

All files15.3 MB

Research groups: Institute of Organic and Analytical chemistry, Orleans, FranceJanssen/Johnson & Johnson
Contact: For any questions please send a mail to plibouba@its.jnj.com