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replica 2 | MDBind 3vd7 | MDRepo

MDBind 3vd7

Open

Pierre-yves Libouban;Pascal Bonnet;Samia Aci-Sèche;

MD-A00616

Created: 16 Feb 2026
License: This trajectory dataset is released under a Creative Commons Attribution 4.0 International Public License (opens in a new tab)

Overview
Experiments 10
People & affiliations 3

Runs

10

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replica 110 ns
replica 210 ns
replica 310 ns
replica 410 ns
replica 510 ns
replica 610 ns
replica 710 ns
replica 810 ns
replica 910 ns
replica 1010 ns

replica 2

Trajectory

63,398 atomsFull system

Length: 10 ns @ 2 fs
Frames: 50 / 200 ps

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Analysis

Parameters

Length

10 ns

@ 2 fs = 5,000,000 steps

Frames

501 frame every 200 ps

Force field

Amber ff14SB, GAFFwater model TIP3P

Atoms

63,398

Box

17.458 x 12.970 x 16.304 nm3,691.71 nm³

Composition

Total system63,398 atoms · 4,051 residues
Protein63,368 atoms · 4,044 residues
Nucleic acids0 atoms · 0 residues
Lipids0 atoms · 0 residues
Carbohydrates0 atoms · 0 residues
Solvent0 atoms · 0 residues

Counter-ions

0Cations (+)
0Anions (-)
0Total ions