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replica 5 | MDBind 3dyo | MDRepo

MDBind 3dyo

Open

Pierre-yves Libouban;Pascal Bonnet;Samia Aci-Sèche;

MD-A0065N

Created: 20 Feb 2026
License: This trajectory dataset is released under a Creative Commons Attribution 4.0 International Public License (opens in a new tab)

Overview
Experiments 10
People & affiliations 3

Runs

10

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replica 110 ns
replica 210 ns
replica 310 ns
replica 410 ns
replica 510 ns
replica 610 ns
replica 710 ns
replica 810 ns
replica 910 ns
replica 1010 ns

replica 5

Trajectory

63,415 atomsFull system

Length: 10 ns @ 2 fs
Frames: 50 / 200 ps

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Analysis

Parameters

Length

10 ns@ 2 fs = 5,000,000 steps

Frames

501 frame every 200 ps

Force field

Amber ff14SB, GAFFwater model TIP3P

Atoms

63,415

Box

13.780 x 15.881 x 18.908 nm4,137.69 nm³

Composition

Total system63,415 atoms · 4,059 residues
Protein63,368 atoms · 4,044 residues
Nucleic acids0 atoms · 0 residues
Lipids0 atoms · 0 residues
Carbohydrates33 atoms · 1 residues
Solvent0 atoms · 0 residues

Counter-ions

0Cations (+)
0Anions (-)
0Total ions