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replica 5 | MDBind 3vdb | MDRepo
Records
MDBind 3vdb
Experiments
replica 5
Overview
MD-A00684
MDBind 3vdb
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Overview
Trajectory viewer
Analyses
Force Field & Water Model
Force field
Amber ff14SB
GAFF
Water model
TIP3P
Simulation Parameters
Frames
50
Frequency
200 ps
Simulation length
10 ns
Timestep
2 fs
Temperature
N/A
Ensemble
N/A
Simulation Box
Box type
N/A
X
13.891 nm
Y
15.796 nm
Z
19.180 nm
Box volume
4,208.21 nm³
System Composition
Total system
63,683
atoms
4,070
residues
Protein
63,652
atoms
4,060
residues
Nucleic acids
0
atoms
0
residues
Lipids
0
atoms
0
residues
Carbohydrates
22
atoms
1
residues
Solvent
0
atoms
Counter-Ions
Cations (+)
0
Anions (-)
0
Total ions
0
0
residues