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replica 8 | MDBind 4pdk | MDRepo
Records
MDBind 4pdk
Experiments
replica 8
Overview
MD-A0068C
MDBind 4pdk
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Overview
Trajectory viewer
Analyses
Force Field & Water Model
Force field
Amber ff14SB
GAFF
Water model
TIP3P
Simulation Parameters
Frames
50
Frequency
200 ps
Simulation length
10 ns
Timestep
2 fs
Temperature
N/A
Ensemble
N/A
Simulation Box
Box type
N/A
X
8.605 nm
Y
10.303 nm
Z
9.410 nm
Box volume
834.32 nm³
System Composition
Total system
8,598
atoms
525
residues
Protein
8,467
atoms
524
residues
Nucleic acids
0
atoms
0
residues
Lipids
0
atoms
0
residues
Carbohydrates
131
atoms
1
residues
Solvent
0
atoms
Counter-Ions
Cations (+)
0
Anions (-)
0
Total ions
0
0
residues