mdCATH 1b1yA00

Molecular system

Starting structure: 1B1YPDB 1B1Y(opens in a new tab)
Force field: CHARMM22*TIP3P
Engine: ACEMD
Method: Classical MD
Ensemble: NVT
Temperature: 320 K
Timestep: 4 fs
Frames: 10,960
Composition: Molecules of interest
ProteinProtein · 1 chain7,803 atoms500 residues
Total7,803 atoms500 residues
Box dimensions: Cubic

Sequences

Sequence 1Protein · 500 residues

MKGNYVQVYV MLPLDAVSVN NRFEKGDELR AQLRKLVEAG VDGVMVDVWW GLVEGKGPKA YDWSAYKQLF ELVQKAGLKL QAIMSFHQCG GNVGDAVNIP IPQWVRDVGT RDPDIFYTDG XGTRNIEYLT LGVDNQPLFH GRSAVQMYAD YMTSFRENMK DFLDAGVIVD IEVGLGPAGE LRYPSYPQSH GWSFPGIGEF ICYDKYLQAD FKAAAAAVGX PEWEFPNDAG QYNDTPERTQ FFRDNGTYLS EKGRFFLAWY SNNLIKHGDR ILDEANKVFL GYKVQLAIKI AGVHWWYKVP SHAAELTAGY YNLHDRDGYR TIARMLKRHR ASINFTCAEM RDSEQPPDAM SAPEELVQQV LSAGWREGLN VSCENALPRY DPTAYNTILR NARPHGINQS GPPEHKLFGF TYLRLSNQLV EGQNYVNFKT FVDRMHANLP RDPYVDPMAP LPRSGPEISI EMILQAAQPK IQPFPFQEHT DLPVGPTGGM GGQAEGPTCG

Run	Outputs
320_rep1	Trajectory Analyses
320_rep2	Trajectory Analyses
320_rep3	Trajectory Analyses
320_rep4	Trajectory Analyses
320_rep5	Trajectory Analyses
348_rep1	Trajectory Analyses
348_rep2	Trajectory Analyses
348_rep3	Trajectory Analyses
348_rep4	Trajectory Analyses
348_rep5	Trajectory Analyses
379_rep1	Trajectory Analyses
379_rep2	Trajectory Analyses
379_rep3	Trajectory Analyses
379_rep4	Trajectory Analyses
379_rep5	Trajectory Analyses
413_rep1	Trajectory Analyses
413_rep2	Trajectory Analyses
413_rep3	Trajectory Analyses
413_rep4	Trajectory Analyses
413_rep5	Trajectory Analyses
450_rep1	Trajectory Analyses
450_rep2	Trajectory Analyses
450_rep3	Trajectory Analyses
450_rep4	Trajectory Analyses
450_rep5	Trajectory Analyses

Files

45 files · 1.4 GB

All files1.4 GB

trajectory.binBIN
pca_trajectory_01.binBIN
pca_trajectory_02.binBIN
pca_trajectory_03.binBIN
pca_trajectory_04.binBIN
pca_trajectory_05.binBIN
pca_trajectory_06.binBIN
pca_trajectory_07.binBIN
pca_trajectory_08.binBIN
pca_trajectory_09.binBIN

Contributors

Research groups: Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB)Institució Catalana de Recerca i Estudis Avançats (ICREA)Acellera LabsBiophysics Institute, National Research Council (CNR-IBF)
Contact: g.defabritiis@gmail.com

mdCATH 1b1yA00

Description

Molecular system

Sequences

Experiments

Files

Contributors