mdCATH 3ed4A02

mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics

Molecular system

Starting structure: 3ED4PDB 3ED4(opens in a new tab)
Force field: CHARMM22*TIP3P
Engine: ACEMD
Method: Classical MD
Ensemble: NVT
Temperature: 320 K
Timestep: 4 fs
Frames: 12,130
Composition: Molecules of interest
ProteinProtein · 1 chain1,404 atoms83 residues
Total1,404 atoms83 residues
Box dimensions: Cubic

Sequence 1Protein · 83 residues

EKPLIFGIDM PFQDDPTDEW AIRDGDWKMI IDRNNKPKYL YNLKSDRYET LNLIGKKPDI EKQMYGKFLK YKTDIDNDSL MKA

34 files · 286 MB

All files286 MB

Research groups: Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB)Institució Catalana de Recerca i Estudis Avançats (ICREA)Acellera LabsBiophysics Institute, National Research Council (CNR-IBF)
Contact: g.defabritiis@gmail.com