mdCATH 3py9A04

mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics

Molecular system

Starting structure: 3PY9PDB 3PY9(opens in a new tab)
Force field: CHARMM22*TIP3P
Engine: ACEMD
Method: Classical MD
Ensemble: NVT
Temperature: 320 K
Timestep: 4 fs
Frames: 12,130
Composition: Molecules of interest
ProteinProtein · 1 chain1,244 atoms78 residues
Total1,244 atoms78 residues
Box dimensions: Cubic

Sequence 1Protein · 78 residues

VKTTTESVDV PYTGKNDKSQ KVKVYIKDKD NDGSTEKGSF DITSDQRIDI PLRIEKGKTA SYIVKVDGKT VAEKEVSY

41 files · 257 MB

All files257 MB

Research groups: Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB)Institució Catalana de Recerca i Estudis Avançats (ICREA)Acellera LabsBiophysics Institute, National Research Council (CNR-IBF)
Contact: g.defabritiis@gmail.com