mdCATH 3vb0A01

mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics

Molecular system

Starting structure: 3VB0PDB 3VB0(opens in a new tab)
Force field: CHARMM22*TIP3P
Engine: ACEMD
Method: Classical MD
Ensemble: NVT
Temperature: 320 K
Timestep: 4 fs
Frames: 11,750
Composition: Molecules of interest
ProteinProtein · 1 chain1,978 atoms129 residues
Total1,978 atoms129 residues
Box dimensions: Cubic

Sequence 1Protein · 129 residues

SVKQLGYLIF ECRADVLEQM VVVYQDIIGA VVERDEGGRA LVRLDGRPFR IRLDPGPANR LAAIGWNVDP SDLAAIAEQV EKACYSVVTA DAELAADRAA AQVRQFADND GFTHELYVES SFPTDPVLE

33 files · 388 MB

All files388 MB

Research groups: Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB)Institució Catalana de Recerca i Estudis Avançats (ICREA)Acellera LabsBiophysics Institute, National Research Council (CNR-IBF)
Contact: g.defabritiis@gmail.com