mdCATH 3vsmA01

mdCATH: A Large-Scale MD Dataset for Data-Driven Computational Biophysics

Molecular system

Starting structure: 3VSMPDB 3VSM(opens in a new tab)
Force field: CHARMM22*TIP3P
Engine: ACEMD
Method: Classical MD
Ensemble: NVT
Temperature: 320 K
Timestep: 4 fs
Frames: 10,990
Composition: Molecules of interest
ProteinProtein · 1 chain5,518 atoms347 residues
Total5,518 atoms347 residues
Box dimensions: Cubic

Sequences

Sequence 1Protein · 347 residues

NIQELQNFER WFKNNLSYSF SQKAEKVVNP NRNWNDNTVF DNLSPWTSVP DFGTVCHTLI GYCVRYNNTS DTLYQNPELA YNLINGLRII CSKLPDPPPH QQAPWGPVAD WYHFTITMPE VFMNITIVLN ETQHYDEAAS LTRYWLGLYL PTAVNSMGWH RTAGNSMRMG VPYTYSQMLR GYSLAQIRQE QGIQEILNTI AFPYVTQGNG LHVDSIYIDX IDVRAYGYLI NSYFTFAYYT YYFGDEVINT VGLTRAIENV GSPEGVVVPG VMSRNGTLYS NVIGNFITYP LAVHSADYSK VLTKLSKTYY GSVVGVTNRL AYYESDPTNN IQAPLWTMAR RIWNRRG

Run	Outputs
320_rep1	Trajectory Analyses
320_rep2	Trajectory Analyses
320_rep3	Trajectory Analyses
320_rep4	Trajectory Analyses
320_rep5	Trajectory Analyses
348_rep1	Trajectory Analyses
348_rep2	Trajectory Analyses
348_rep3	Trajectory Analyses
348_rep4	Trajectory Analyses
348_rep5	Trajectory Analyses
379_rep1	Trajectory Analyses
379_rep2	Trajectory Analyses
379_rep3	Trajectory Analyses
379_rep4	Trajectory Analyses
379_rep5	Trajectory Analyses
413_rep1	Trajectory Analyses
413_rep2	Trajectory Analyses
413_rep3	Trajectory Analyses
413_rep4	Trajectory Analyses
413_rep5	Trajectory Analyses
450_rep1	Trajectory Analyses
450_rep2	Trajectory Analyses
450_rep3	Trajectory Analyses
450_rep4	Trajectory Analyses
450_rep5	Trajectory Analyses

Files

41 files · 1008 MB

All files1008 MB

trajectory.binBIN
pca_trajectory_01.binBIN
pca_trajectory_02.binBIN
pca_trajectory_03.binBIN
pca_trajectory_04.binBIN
pca_trajectory_05.binBIN
pca_trajectory_06.binBIN
pca_trajectory_07.binBIN
pca_trajectory_08.binBIN
pca_trajectory_09.binBIN

Contributors

Research groups: Computational Science Laboratory, Universitat Pompeu Fabra, Barcelona Biomedical Research Park (PRBB)Institució Catalana de Recerca i Estudis Avançats (ICREA)Acellera LabsBiophysics Institute, National Research Council (CNR-IBF)
Contact: g.defabritiis@gmail.com

mdCATH 3vsmA01

Description

Molecular system

Sequences

Experiments

Files

Contributors